2024
Journal Articles
1.
Angelini, Ronaldo; Lima, Maria Alice Leite; Lira, Alex Souza; Lucena-Frédou, Flávia; Frédou, Thierry; Bertrand, Arnaud; Giarrizzo, Tommaso; Steenbeek, Jeroen; Coll, Marta; Keppeler, Friedrich Wolfgang
The projected impacts of climate change and fishing pressure on a tropical marine food web Journal Article
In: Marine Environmental Research, pp. 106909, 2024, (Publisher: Elsevier).
Links | BibTeX | Tags: Brazil, Ecospace, fisheries
@article{angelini_projected_2024,
title = {The projected impacts of climate change and fishing pressure on a tropical marine food web},
author = {Ronaldo Angelini and Maria Alice Leite Lima and Alex Souza Lira and Fl\'{a}via Lucena-Fr\'{e}dou and Thierry Fr\'{e}dou and Arnaud Bertrand and Tommaso Giarrizzo and Jeroen Steenbeek and Marta Coll and Friedrich Wolfgang Keppeler},
url = {https://www.sciencedirect.com/science/article/pii/S0141113624005701},
year = {2024},
date = {2024-01-01},
urldate = {2025-01-08},
journal = {Marine Environmental Research},
pages = {106909},
note = {Publisher: Elsevier},
keywords = {Brazil, Ecospace, fisheries},
pubstate = {published},
tppubtype = {article}
}
2023
Journal Articles
2.
Shaffer, Michelle; Marriott, Sara; Lewis, Kristy A.; Buszowski, Joe; Mutsert, Kim
In: Marine and Coastal Fisheries, vol. 15, no. 6, pp. e10262, 2023, ISSN: 1942-5120.
Abstract | Links | BibTeX | Tags: action science, decision support tool, Ecosystem model, fisheries, hypoxia, management, nutrients, stakeholder survey instrument, water quality
@article{shafferActionSciencePractice2023,
title = {Action Science in Practice: Co-production of a Decision Support Tool Visualizing Effects of Nutrient and Hypoxia Reduction Goals on Fisheries Species},
author = {Michelle Shaffer and Sara Marriott and Kristy A. Lewis and Joe Buszowski and Kim Mutsert},
doi = {10.1002/mcf2.10262},
issn = {1942-5120},
year = {2023},
date = {2023-01-01},
urldate = {2024-01-18},
journal = {Marine and Coastal Fisheries},
volume = {15},
number = {6},
pages = {e10262},
abstract = {Objective The Gulf of Mexico hosts some of the most productive fisheries in the United States, whereas the same region is known to experience environmental stressors, such as summer hypoxia. Ecosystem models have been developed for the Gulf of Mexico to determine how hypoxia affects living marine resources, but these models and their output are not always easy to access or interpret by managers, thereby decreasing their implementation in a management setting. To help alleviate the gap between ecosystem model development and management utility, the current study focuses on co-produced, user-friendly tools that describe the effects of nutrient and hypoxia reductions on marine living resources. Methods Two decisions were made prior to the ecosystem model development to facilitate the transfer of model output: (1) to engage and consult fisheries and restoration managers throughout ecosystem model development to ensure that the output would provide relevant information; and (2) to provide an accessible visualization tool for making ecosystem model output readily available to support the needs of decision makers. Result Results from an advisory panel survey instrument and advisory panel meetings guided ecosystem model development and launched the development of a decision support tool. The iterative process of building a decision support tool incorporating feedback from survey instrument respondents resulted in an ESRI ArcGIS Dashboard that allows end-users to identify the effects of hypoxia and respondent-specified nutrient and hypoxia reduction goals on the biomass and distribution of fisheries species. Conclusion The intent is to aid managers who are actively working to address hypoxia in the Gulf of Mexico with easy-to-access information on the effects of planned actions and to encourage future modelers to apply action science principles to best address the needs of decision makers.},
keywords = {action science, decision support tool, Ecosystem model, fisheries, hypoxia, management, nutrients, stakeholder survey instrument, water quality},
pubstate = {published},
tppubtype = {article}
}
Objective The Gulf of Mexico hosts some of the most productive fisheries in the United States, whereas the same region is known to experience environmental stressors, such as summer hypoxia. Ecosystem models have been developed for the Gulf of Mexico to determine how hypoxia affects living marine resources, but these models and their output are not always easy to access or interpret by managers, thereby decreasing their implementation in a management setting. To help alleviate the gap between ecosystem model development and management utility, the current study focuses on co-produced, user-friendly tools that describe the effects of nutrient and hypoxia reductions on marine living resources. Methods Two decisions were made prior to the ecosystem model development to facilitate the transfer of model output: (1) to engage and consult fisheries and restoration managers throughout ecosystem model development to ensure that the output would provide relevant information; and (2) to provide an accessible visualization tool for making ecosystem model output readily available to support the needs of decision makers. Result Results from an advisory panel survey instrument and advisory panel meetings guided ecosystem model development and launched the development of a decision support tool. The iterative process of building a decision support tool incorporating feedback from survey instrument respondents resulted in an ESRI ArcGIS Dashboard that allows end-users to identify the effects of hypoxia and respondent-specified nutrient and hypoxia reduction goals on the biomass and distribution of fisheries species. Conclusion The intent is to aid managers who are actively working to address hypoxia in the Gulf of Mexico with easy-to-access information on the effects of planned actions and to encourage future modelers to apply action science principles to best address the needs of decision makers.
Book Sections
3.
Mutsert, Kim; Coll, Marta; Steenbeek, Jeroen; Ainsworth, Cameron; Buszowski, Joe; Chagaris, David; Christensen, Villy; Heymans, Sheila J. J.; Lewis, Kristy A.; Libralato, Simone; Oldford, Greig; Piroddi, Chiara; Romagnoni, Giovanni; Serpetti, Natalia; Spence, Michael A.; Walters, Carl
Advances in Spatial-temporal Coastal and Marine Ecosystem Modeling Using Ecospace. Book Section
In: Reference Module in Earth Systems and Environmental Sciences, Elsevier, 2023, ISBN: 978-0-12-409548-9.
Abstract | Links | BibTeX | Tags: Aquatic, Coastal restoration, Ecological modeling, Ecopath with Ecosim, Ecospace, Ecosystem-based management, Ecosystems, Environmental impact, Fish ecology, fisheries, food webs, Marine, Policy, Spatial temporal modeling
@incollection{demutsertAdvancesSpatialTemporal2023,
title = {Advances in Spatial-temporal Coastal and Marine Ecosystem Modeling Using Ecospace.},
author = {Kim Mutsert and Marta Coll and Jeroen Steenbeek and Cameron Ainsworth and Joe Buszowski and David Chagaris and Villy Christensen and Sheila J. J. Heymans and Kristy A. Lewis and Simone Libralato and Greig Oldford and Chiara Piroddi and Giovanni Romagnoni and Natalia Serpetti and Michael A. Spence and Carl Walters},
doi = {10.1016/B978-0-323-90798-9.00035-4},
isbn = {978-0-12-409548-9},
year = {2023},
date = {2023-01-01},
urldate = {2023-06-20},
booktitle = {Reference Module in Earth Systems and Environmental Sciences},
publisher = {Elsevier},
abstract = {The advancement of ecosystem-based management of aquatic ecosystems should no longer be limited by a lack of tools. However, a lack of comprehensive understanding of the capabilities of existing tools can form a barrier for uptake. With this chapter, we strive to more fully describe one of these tools, the spatial-temporal ecosystem model Ecospace, which is part of the Ecopath with Ecosim (EwE) ecosystem modeling approach and software. Changes and developments in Ecospace have been faster than documented in recent years. Many features of Ecospace, including the most recent that have not been described before, are detailed in this chapter. The applications highlighted showcase the multitude of uses of the spatial application of EwE, which, especially due to expansion of the capabilities to incorporate the effects of environmental change, has facilitated its use outside of fisheries management to protection of biodiversity, ecosystem restoration and environmental impact assessment. New applications of Ecospace can truly contribute to advance modeling of cumulative impacts and management alternatives in marine ecosystems, and can be of interest to inform sectoral and intersectoral policy.},
keywords = {Aquatic, Coastal restoration, Ecological modeling, Ecopath with Ecosim, Ecospace, Ecosystem-based management, Ecosystems, Environmental impact, Fish ecology, fisheries, food webs, Marine, Policy, Spatial temporal modeling},
pubstate = {published},
tppubtype = {incollection}
}
The advancement of ecosystem-based management of aquatic ecosystems should no longer be limited by a lack of tools. However, a lack of comprehensive understanding of the capabilities of existing tools can form a barrier for uptake. With this chapter, we strive to more fully describe one of these tools, the spatial-temporal ecosystem model Ecospace, which is part of the Ecopath with Ecosim (EwE) ecosystem modeling approach and software. Changes and developments in Ecospace have been faster than documented in recent years. Many features of Ecospace, including the most recent that have not been described before, are detailed in this chapter. The applications highlighted showcase the multitude of uses of the spatial application of EwE, which, especially due to expansion of the capabilities to incorporate the effects of environmental change, has facilitated its use outside of fisheries management to protection of biodiversity, ecosystem restoration and environmental impact assessment. New applications of Ecospace can truly contribute to advance modeling of cumulative impacts and management alternatives in marine ecosystems, and can be of interest to inform sectoral and intersectoral policy.
2022
Journal Articles
4.
Ramírez, Francisco; Shannon, Lynne J.; Angelini, Ronaldo; Steenbeek, Jeroen; Coll, Marta
Overfishing species on the move may burden seafood provision in the low-latitude Atlantic Ocean Journal Article
In: Science of The Total Environment, vol. 836, pp. 155480, 2022, ISSN: 0048-9697.
Abstract | Links | BibTeX | Tags: Climate Change, fisheries, Safe Operating Space, Seafood provisioning, Shifting distribution, Small and medium size pelagic fish
@article{ramirez_overfishing_2022,
title = {Overfishing species on the move may burden seafood provision in the low-latitude Atlantic Ocean},
author = {Francisco Ram\'{i}rez and Lynne J. Shannon and Ronaldo Angelini and Jeroen Steenbeek and Marta Coll},
url = {https://www.sciencedirect.com/science/article/pii/S0048969722025761},
doi = {10.1016/j.scitotenv.2022.155480},
issn = {0048-9697},
year = {2022},
date = {2022-08-01},
urldate = {2022-05-11},
journal = {Science of The Total Environment},
volume = {836},
pages = {155480},
abstract = {Climate and fisheries interact, often synergistically, and may challenge marine ecosystem functioning and management, along with seafood provision. Here, we spatially combine highly resolved assessments of climate-driven changes in optimal environmental conditions (i.e., optimal habitats) for the pelagic fish community with available industrial fishery data to identify highly impacted inshore areas in the Central and Southern Atlantic Ocean. Overall, optimal habitat availability remained stable or decreased over recent decades for most commercial, small and medium size pelagic species, particularly in low-latitude regions. We also find a worrying overlap of these areas with fishing hotspots. Nations near the Equator (particularly along the African coast) have been doubly impacted by climate and industrial fisheries, with ultimate consequences on fish stocks and ecosystems as a whole. Management and conservation actions are urgently required to prevent species depletions and ensure seafood provisioning in these highly impacted, and often socioeconomically constrained areas. These actions may include redistributing fishing pressure and reducing it in local areas where climate forcing is particularly high, balancing resource exploitation and the conservation of marine life-supporting services in the face of climate change.},
keywords = {Climate Change, fisheries, Safe Operating Space, Seafood provisioning, Shifting distribution, Small and medium size pelagic fish},
pubstate = {published},
tppubtype = {article}
}
Climate and fisheries interact, often synergistically, and may challenge marine ecosystem functioning and management, along with seafood provision. Here, we spatially combine highly resolved assessments of climate-driven changes in optimal environmental conditions (i.e., optimal habitats) for the pelagic fish community with available industrial fishery data to identify highly impacted inshore areas in the Central and Southern Atlantic Ocean. Overall, optimal habitat availability remained stable or decreased over recent decades for most commercial, small and medium size pelagic species, particularly in low-latitude regions. We also find a worrying overlap of these areas with fishing hotspots. Nations near the Equator (particularly along the African coast) have been doubly impacted by climate and industrial fisheries, with ultimate consequences on fish stocks and ecosystems as a whole. Management and conservation actions are urgently required to prevent species depletions and ensure seafood provisioning in these highly impacted, and often socioeconomically constrained areas. These actions may include redistributing fishing pressure and reducing it in local areas where climate forcing is particularly high, balancing resource exploitation and the conservation of marine life-supporting services in the face of climate change.
5.
Ramírez, Francisco; Shannon, Lynne J.; Angelini, Ronaldo; Steenbeek, Jeroen; Coll, Marta
Overfishing Species on the Move May Burden Seafood Provision in the Low-Latitude Atlantic Ocean Journal Article
In: Science of The Total Environment, vol. 836, pp. 155480, 2022, ISSN: 0048-9697.
Abstract | Links | BibTeX | Tags: Climate Change, fisheries, Safe Operating Space, Seafood provisioning, Shifting distribution, Small and medium size pelagic fish
@article{ramirezOverfishingSpeciesMove2022,
title = {Overfishing Species on the Move May Burden Seafood Provision in the Low-Latitude Atlantic Ocean},
author = {Francisco Ram\'{i}rez and Lynne J. Shannon and Ronaldo Angelini and Jeroen Steenbeek and Marta Coll},
doi = {10.1016/j.scitotenv.2022.155480},
issn = {0048-9697},
year = {2022},
date = {2022-08-01},
urldate = {2022-05-11},
journal = {Science of The Total Environment},
volume = {836},
pages = {155480},
abstract = {Climate and fisheries interact, often synergistically, and may challenge marine ecosystem functioning and management, along with seafood provision. Here, we spatially combine highly resolved assessments of climate-driven changes in optimal environmental conditions (i.e., optimal habitats) for the pelagic fish community with available industrial fishery data to identify highly impacted inshore areas in the Central and Southern Atlantic Ocean. Overall, optimal habitat availability remained stable or decreased over recent decades for most commercial, small and medium size pelagic species, particularly in low-latitude regions. We also find a worrying overlap of these areas with fishing hotspots. Nations near the Equator (particularly along the African coast) have been doubly impacted by climate and industrial fisheries, with ultimate consequences on fish stocks and ecosystems as a whole. Management and conservation actions are urgently required to prevent species depletions and ensure seafood provisioning in these highly impacted, and often socioeconomically constrained areas. These actions may include redistributing fishing pressure and reducing it in local areas where climate forcing is particularly high, balancing resource exploitation and the conservation of marine life-supporting services in the face of climate change.},
keywords = {Climate Change, fisheries, Safe Operating Space, Seafood provisioning, Shifting distribution, Small and medium size pelagic fish},
pubstate = {published},
tppubtype = {article}
}
Climate and fisheries interact, often synergistically, and may challenge marine ecosystem functioning and management, along with seafood provision. Here, we spatially combine highly resolved assessments of climate-driven changes in optimal environmental conditions (i.e., optimal habitats) for the pelagic fish community with available industrial fishery data to identify highly impacted inshore areas in the Central and Southern Atlantic Ocean. Overall, optimal habitat availability remained stable or decreased over recent decades for most commercial, small and medium size pelagic species, particularly in low-latitude regions. We also find a worrying overlap of these areas with fishing hotspots. Nations near the Equator (particularly along the African coast) have been doubly impacted by climate and industrial fisheries, with ultimate consequences on fish stocks and ecosystems as a whole. Management and conservation actions are urgently required to prevent species depletions and ensure seafood provisioning in these highly impacted, and often socioeconomically constrained areas. These actions may include redistributing fishing pressure and reducing it in local areas where climate forcing is particularly high, balancing resource exploitation and the conservation of marine life-supporting services in the face of climate change.
2021
Journal Articles
6.
Noleto-Filho, E. M.; Angelini, R.; Steenbeek, J.; Carvalho, A.
New, flexible and open-source fisheries self-reporting app: The Shiny4SelfReport Journal Article
In: SoftwareX, vol. 16, pp. 100843, 2021, ISSN: 2352-7110.
Links | BibTeX | Tags: fisheries, Monitoring, R software, Self-reporting, Shiny apps, software development
@article{noleto-filho_new_2021,
title = {New, flexible and open-source fisheries self-reporting app: The Shiny4SelfReport},
author = {E. M. Noleto-Filho and R. Angelini and J. Steenbeek and A. Carvalho},
url = {https://www.sciencedirect.com/science/article/pii/S2352711021001254},
doi = {10.1016/j.softx.2021.100843},
issn = {2352-7110},
year = {2021},
date = {2021-12-01},
urldate = {2021-12-01},
journal = {SoftwareX},
volume = {16},
pages = {100843},
keywords = {fisheries, Monitoring, R software, Self-reporting, Shiny apps, software development},
pubstate = {published},
tppubtype = {article}
}
7.
Noleto-Filho, Eurico Mesquita; Angelini, Ronaldo; Steenbeek, Jeroen; Carvalho, Adriana Rosa
New, Flexible and Open-Source Fisheries Self-Reporting App: The Shiny4SelfReport Journal Article
In: SoftwareX, vol. 16, pp. 100843, 2021, ISSN: 2352-7110.
Abstract | Links | BibTeX | Tags: fisheries, Monitoring, R software, Self-reporting, Shiny apps
@article{noleto-filhoNewFlexibleOpensource2021,
title = {New, Flexible and Open-Source Fisheries Self-Reporting App: The Shiny4SelfReport},
author = {Eurico Mesquita Noleto-Filho and Ronaldo Angelini and Jeroen Steenbeek and Adriana Rosa Carvalho},
doi = {10.1016/j.softx.2021.100843},
issn = {2352-7110},
year = {2021},
date = {2021-12-01},
urldate = {2021-11-05},
journal = {SoftwareX},
volume = {16},
pages = {100843},
abstract = {Self-reporting applications are considered a promising solution for fisheries data monitoring. However, they are still failing in providing accurate information and engaging users. We introduce the Shiny4SelfReport, an application for self-reporting data in fisheries that aims to address these shortcomings. Instead of using expensive proprietary software, we demonstrate how common and affordable technologies can be used to fill gaps in fisheries management of developing nations. The tool, developed in R, works by gathering fishers' inputs and storing them in the cloud. It was designed to be simple and adaptable. Our application improves the data assembly on small-scale fisheries, provides fishers' engagement and data accuracy, and may integrate fisheries' knowledge worldwide while filling the gaps on data-poor fisheries. The app is available at http://triatlas.shinyapps.io/Shiny4SelfReport under a General Public License (GPLv3).},
keywords = {fisheries, Monitoring, R software, Self-reporting, Shiny apps},
pubstate = {published},
tppubtype = {article}
}
Self-reporting applications are considered a promising solution for fisheries data monitoring. However, they are still failing in providing accurate information and engaging users. We introduce the Shiny4SelfReport, an application for self-reporting data in fisheries that aims to address these shortcomings. Instead of using expensive proprietary software, we demonstrate how common and affordable technologies can be used to fill gaps in fisheries management of developing nations. The tool, developed in R, works by gathering fishers' inputs and storing them in the cloud. It was designed to be simple and adaptable. Our application improves the data assembly on small-scale fisheries, provides fishers' engagement and data accuracy, and may integrate fisheries' knowledge worldwide while filling the gaps on data-poor fisheries. The app is available at http://triatlas.shinyapps.io/Shiny4SelfReport under a General Public License (GPLv3).
8.
Albo-Puigserver, M.; Pennino, M. Grazia; Bellido, J. M.; Colmenero, A. Isabel; Giráldez, A.; Hidalgo, M.; Ramírez, J. G.; Steenbeek, J.; Torres, P.; Cousido-Rocha, M.; Coll, M.
Changes in Life History Traits of Small Pelagic Fish in the Western Mediterranean Sea Journal Article
In: Frontiers in Marine Science, vol. 8, pp. 1197, 2021, ISSN: 2296-7745.
Links | BibTeX | Tags: Ecosystem based management (EBM), fisheries, small pelagic fish, traits
@article{albo-puigserver_changes_2021,
title = {Changes in Life History Traits of Small Pelagic Fish in the Western Mediterranean Sea},
author = {M. Albo-Puigserver and M. Grazia Pennino and J. M. Bellido and A. Isabel Colmenero and A. Gir\'{a}ldez and M. Hidalgo and J. G. Ram\'{i}rez and J. Steenbeek and P. Torres and M. Cousido-Rocha and M. Coll},
url = {https://www.frontiersin.org/article/10.3389/fmars.2021.570354},
doi = {10.3389/fmars.2021.570354},
issn = {2296-7745},
year = {2021},
date = {2021-01-01},
urldate = {2021-01-01},
journal = {Frontiers in Marine Science},
volume = {8},
pages = {1197},
keywords = {Ecosystem based management (EBM), fisheries, small pelagic fish, traits},
pubstate = {published},
tppubtype = {article}
}
2020
Journal Articles
9.
Booth, S.; Walters, W. J.; Steenbeek, J.; Christensen, V.; Charmasson, S.
An Ecopath with Ecosim model for the Pacific coast of eastern Japan: Describing the marine environment and its fisheries prior to the Great East Japan earthquake Journal Article
In: Ecological Modelling, vol. 428, pp. 109087, 2020, (Publisher: Elsevier).
BibTeX | Tags: contaminant tracing, Ecospace, fisheries, historical changes, Japan, regional study
@article{booth_ecopath_2020,
title = {An Ecopath with Ecosim model for the Pacific coast of eastern Japan: Describing the marine environment and its fisheries prior to the Great East Japan earthquake},
author = {S. Booth and W. J. Walters and J. Steenbeek and V. Christensen and S. Charmasson},
year = {2020},
date = {2020-01-01},
urldate = {2020-01-01},
journal = {Ecological Modelling},
volume = {428},
pages = {109087},
note = {Publisher: Elsevier},
keywords = {contaminant tracing, Ecospace, fisheries, historical changes, Japan, regional study},
pubstate = {published},
tppubtype = {article}
}
Technical Reports
10.
Waldron, A.; Adams, V.; Allan, J.; Arnell, A.; Asner, G.; Atkinson, S.; Baccini, A.; Baillie, J. E. M.; Balmford, A.; Beau, J. A.; Brander, L.; Brondizio, E.; Bruner, A.; Burgess, N. D.; Burkart, K.; Butchart, S. H. M.; Button, R.; Carrasco, R.; Cheung, W. W. L.; Christensen, V.; Clements, A.; Coll, M.; di Marco, M.; Deguignet, M.; Dinerstein, E.; Ellis, E.; Eppink, F.; Ervin, J.; Escobedo, A.; Fa, J.; Fernandes-Llamazares, A.; Fernando, S.; Fujimori, S.; Fulton, E. A.; Garnett, S.; Gerber, J.; Gill, D.; Gopalakrishna, T.; Hahn, N.; Halpern, B.; Hasegawa, T.; Havlik, P.; Heikinheimo, V.; Heneghan, R. F.; Henry, E.; Humpenoder, F.; Jonas, H.; Jones, K. R.; Joppa, J.; Joshi, A. R.; Jung, M.; Kingston, N.; Klein, C. J.; Krisztin, T.; Lam, V.; Leclere, D.; Lindsey, P.; Locke, H.; Lovejoy, T.; Madgwick, P.; Malhi, Y.; Malmer, P.; Maron, M.; Mayorga, J.; van Meijl, H.; Miller, D.; Molnar, Z.; Mueller, N.; Mukherjee, N.; Naidoo, R.; Nakamura, K.; Nepal, P.; Noss, R.; O’Leary, B.; Olson, D.; Abrantes, J. Palcios; Paxton, M.; Popp, A.; Possingham, H.; Prestemon, J.; Reside, A.; Robinson, C.; Robinson, J.; Sala, E.; Scherrer, K.; Spalding, M. D.; Spenceley, A.; Steenbeek, J.; Stehfest, E.; Strassborg, B.; Sumaila, R.; Swinnerton, K.; Sze, J.; Tittensor, D. P.; Toivonen, T.; Toledo, A.; Torres, P. Negret; van Zeist, W-J; Vause, J.; Venter, O.; Vilela, T.; Visconti, P.; Vynne, C.; Watson, R.; Watson, J.; Wikramanayake, E.; William, B.; Wintle, B. A.; Woodley, S.; Wu, W.; Zander, K.; Zhang, Y.; Zhang, Y.
Campaign for nature 2020.
Links | BibTeX | Tags: EcoOcean, ecosystem services, fisheries, global study
@techreport{waldron_2020_thirtypct,
title = {Protecting 30% of the planet for nature: costs, benefits and economic implications. Working paper analysing the economic implications of the proposed 30% target for areal protection in the draft post-2020 Global Biodiversity Framework},
author = {A. Waldron and V. Adams and J. Allan and A. Arnell and G. Asner and S. Atkinson and A. Baccini and J. E. M. Baillie and A. Balmford and J. A. Beau and L. Brander and E. Brondizio and A. Bruner and N. D. Burgess and K. Burkart and S. H. M. Butchart and R. Button and R. Carrasco and W. W. L. Cheung and V. Christensen and A. Clements and M. Coll and M. di Marco and M. Deguignet and E. Dinerstein and E. Ellis and F. Eppink and J. Ervin and A. Escobedo and J. Fa and A. Fernandes-Llamazares and S. Fernando and S. Fujimori and E. A. Fulton and S. Garnett and J. Gerber and D. Gill and T. Gopalakrishna and N. Hahn and B. Halpern and T. Hasegawa and P. Havlik and V. Heikinheimo and R. F. Heneghan and E. Henry and F. Humpenoder and H. Jonas and K. R. Jones and J. Joppa and A. R. Joshi and M. Jung and N. Kingston and C. J. Klein and T. Krisztin and V. Lam and D. Leclere and P. Lindsey and H. Locke and T. Lovejoy and P. Madgwick and Y. Malhi and P. Malmer and M. Maron and J. Mayorga and H. van Meijl and D. Miller and Z. Molnar and N. Mueller and N. Mukherjee and R. Naidoo and K. Nakamura and P. Nepal and R. Noss and B. O’Leary and D. Olson and J. Palcios Abrantes and M. Paxton and A. Popp and H. Possingham and J. Prestemon and A. Reside and C. Robinson and J. Robinson and E. Sala and K. Scherrer and M. D. Spalding and A. Spenceley and J. Steenbeek and E. Stehfest and B. Strassborg and R. Sumaila and K. Swinnerton and J. Sze and D. P. Tittensor and T. Toivonen and A. Toledo and P. Negret Torres and W-J van Zeist and J. Vause and O. Venter and T. Vilela and P. Visconti and C. Vynne and R. Watson and J. Watson and E. Wikramanayake and B. William and B. A. Wintle and S. Woodley and W. Wu and K. Zander and Y. Zhang and Y. Zhang},
url = {https://www.campaignfornature.org/protecting-30-of-the-planet-for-nature-economic-analysis},
year = {2020},
date = {2020-07-17},
urldate = {2020-07-17},
institution = {Campaign for nature},
keywords = {EcoOcean, ecosystem services, fisheries, global study},
pubstate = {published},
tppubtype = {techreport}
}
2017
Journal Articles
11.
Piroddi, C.; Coll, M.; Liquete, C.; Macias, D.; Greer, K.; Buszowski, J.; Steenbeek, J.; Danovaro, R.; Christensen, V.
Historical changes of the Mediterranean Sea ecosystem: modelling the role and impact of primary productivity and fisheries changes over time Journal Article
In: Scientific Reports, vol. 7, 2017.
Links | BibTeX | Tags: climate change impacts, fisheries, historical changes, Mediterranean Sea
@article{piroddi_historical_2017,
title = {Historical changes of the Mediterranean Sea ecosystem: modelling the role and impact of primary productivity and fisheries changes over time},
author = {C. Piroddi and M. Coll and C. Liquete and D. Macias and K. Greer and J. Buszowski and J. Steenbeek and R. Danovaro and V. Christensen},
url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5349533/},
year = {2017},
date = {2017-01-01},
urldate = {2017-01-01},
journal = {Scientific Reports},
volume = {7},
keywords = {climate change impacts, fisheries, historical changes, Mediterranean Sea},
pubstate = {published},
tppubtype = {article}
}
2016
Journal Articles
12.
Steenbeek, J.; Buszowski, J.; Christensen, V.; Akoglu, E.; Aydin, K.; Ellis, N.; Felinto, D.; Guitton, J.; Lucey, S.; Kearney, K.; Mackinson, S.; Pan, M.; Platts, M.; Walters, C. J.
Ecopath with Ecosim as a model-building toolbox: Source code capabilities, extensions, and variations Journal Article
In: Ecological Modelling, vol. 319, pp. 178–189, 2016, ISSN: 0304-3800.
Abstract | Links | BibTeX | Tags: Ecopath with Ecosim, ecosystem, fisheries, food web, model interoperability, software development
@article{steenbeek_ecopath_2016,
title = {Ecopath with Ecosim as a model-building toolbox: Source code capabilities, extensions, and variations},
author = {J. Steenbeek and J. Buszowski and V. Christensen and E. Akoglu and K. Aydin and N. Ellis and D. Felinto and J. Guitton and S. Lucey and K. Kearney and S. Mackinson and M. Pan and M. Platts and C. J. Walters},
url = {http://www.sciencedirect.com/science/article/pii/S030438001500280X},
doi = {doi:10.1016/j.ecolmodel.2015.06.031},
issn = {0304-3800},
year = {2016},
date = {2016-01-01},
urldate = {2016-01-01},
journal = {Ecological Modelling},
volume = {319},
pages = {178--189},
abstract = {Ecopath with Ecosim (EwE) is a widely applied food web model that is mostly known as desktop software for the Microsoft Windows platform. The freely available Microsoft .NET source code of EwE, however, provides a range of possibilities to use the model in different ways, to customize and extend the model, and to execute the model on different operating systems. We provide an overview of the EwE source code, its philosophy, and its technical capabilities, targeted to model builders and advanced users of the EwE software. We showcase novel scientific applications of the EwE model that have been facilitated because of the modular approach of the system. We also present three additional versions of EwE that have been written in different computer languages for dedicated purposes. Lastly, we provide an entry point for users for obtaining and using the source code for custom purposes.},
keywords = {Ecopath with Ecosim, ecosystem, fisheries, food web, model interoperability, software development},
pubstate = {published},
tppubtype = {article}
}
Ecopath with Ecosim (EwE) is a widely applied food web model that is mostly known as desktop software for the Microsoft Windows platform. The freely available Microsoft .NET source code of EwE, however, provides a range of possibilities to use the model in different ways, to customize and extend the model, and to execute the model on different operating systems. We provide an overview of the EwE source code, its philosophy, and its technical capabilities, targeted to model builders and advanced users of the EwE software. We showcase novel scientific applications of the EwE model that have been facilitated because of the modular approach of the system. We also present three additional versions of EwE that have been written in different computer languages for dedicated purposes. Lastly, we provide an entry point for users for obtaining and using the source code for custom purposes.
13.
Coll, M.; Steenbeek, J.; Sole, J.; Palomera, I.; Christensen, V.
Modelling the cumulative spatial-temporal effects of environmental factors and fishing in a NW Mediterranean marine ecosystem Journal Article
In: Ecological Modelling, vol. 331, pp. 100–114, 2016.
BibTeX | Tags: climate change impacts, fisheries, Mediterranean Sea
@article{coll_modelling_2016,
title = {Modelling the cumulative spatial-temporal effects of environmental factors and fishing in a NW Mediterranean marine ecosystem},
author = {M. Coll and J. Steenbeek and J. Sole and I. Palomera and V. Christensen},
year = {2016},
date = {2016-01-01},
journal = {Ecological Modelling},
volume = {331},
pages = {100--114},
keywords = {climate change impacts, fisheries, Mediterranean Sea},
pubstate = {published},
tppubtype = {article}
}
14.
Eddy, T. D.; Lotze, H. K.; Fulton, E. A.; Coll, M.; Ainsworth, C. H.; de Araújo, J. Neves; Bulman, C.; Bundy, A.; Christensen, V.; Field, J.; Gribble, N.; Hasan, M.; Mackinson, S.; Townsend, H.
Ecosystem Effects of Invertebrate Fisheries Journal Article
In: Fish and Fisheries, vol. 18, no. 1, pp. 40–53, 2016.
Links | BibTeX | Tags: fisheries, invertebrates
@article{eddy_ecosystem_2016,
title = {Ecosystem Effects of Invertebrate Fisheries},
author = {T. D. Eddy and H. K. Lotze and E. A. Fulton and M. Coll and C. H. Ainsworth and J. Neves de Ara\'{u}jo and C. Bulman and A. Bundy and V. Christensen and J. Field and N. Gribble and M. Hasan and S. Mackinson and H. Townsend},
doi = {10.1111/faf.12165},
year = {2016},
date = {2016-01-01},
urldate = {2016-01-01},
journal = {Fish and Fisheries},
volume = {18},
number = {1},
pages = {40--53},
keywords = {fisheries, invertebrates},
pubstate = {published},
tppubtype = {article}
}
15.
Steenbeek, J.; Buszowski, J.; Christensen, V.; Akoglu, E.; Aydin, K.; Ellis, N.; Felinto, D.; Guitton, J.; Lucey, S.; Kearney, K.; Mackinson, S.; Pan, M.; Platts, M.; Walters, C. J.
Ecopath with Ecosim as a model-building toolbox: Source code capabilities, extensions, and variations Journal Article
In: Ecological Modelling, vol. 319, pp. 178–189, 2016, ISSN: 0304-3800.
Links | BibTeX | Tags: Ecopath with Ecosim, ecosystem, fisheries, Food web model, model interoperability, Open source software
@article{steenbeek_ecopath_2016b,
title = {Ecopath with Ecosim as a model-building toolbox: Source code capabilities, extensions, and variations},
author = {J. Steenbeek and J. Buszowski and V. Christensen and E. Akoglu and K. Aydin and N. Ellis and D. Felinto and J. Guitton and S. Lucey and K. Kearney and S. Mackinson and M. Pan and M. Platts and C. J. Walters},
url = {http://www.sciencedirect.com/science/article/pii/S030438001500280X},
doi = {10.1016/j.ecolmodel.2015.06.031},
issn = {0304-3800},
year = {2016},
date = {2016-01-01},
urldate = {2016-01-01},
journal = {Ecological Modelling},
volume = {319},
pages = {178--189},
keywords = {Ecopath with Ecosim, ecosystem, fisheries, Food web model, model interoperability, Open source software},
pubstate = {published},
tppubtype = {article}
}
16.
Steenbeek, Jeroen; Buszowski, Joe; Christensen, Villy; Akoglu, Ekin; Aydin, Kerim; Ellis, Nick; Felinto, Dalai; Guitton, Jerome; Lucey, Sean; Kearney, Kelly; Mackinson, Steven; Pan, Mike; Platts, Mark; Walters, Carl
Ecopath with Ecosim as a Model-Building Toolbox: Source Code Capabilities, Extensions, and Variations Journal Article
In: Ecological Modelling, vol. 319, pp. 178–189, 2016, ISSN: 0304-3800.
Abstract | Links | BibTeX | Tags: Ecopath with Ecosim, ecosystem, fisheries, Food web model, model interoperability, Open source software
@article{steenbeekEcopathEcosimModelbuilding2016,
title = {Ecopath with Ecosim as a Model-Building Toolbox: Source Code Capabilities, Extensions, and Variations},
author = {Jeroen Steenbeek and Joe Buszowski and Villy Christensen and Ekin Akoglu and Kerim Aydin and Nick Ellis and Dalai Felinto and Jerome Guitton and Sean Lucey and Kelly Kearney and Steven Mackinson and Mike Pan and Mark Platts and Carl Walters},
doi = {10.1016/j.ecolmodel.2015.06.031},
issn = {0304-3800},
year = {2016},
date = {2016-01-01},
urldate = {2015-09-09},
journal = {Ecological Modelling},
volume = {319},
pages = {178\textendash189},
abstract = {Ecopath with Ecosim (EwE) is a widely applied food web model that is mostly known as desktop software for the Microsoft Windows platform. The freely available Microsoft .NET source code of EwE, however, provides a range of possibilities to use the model in different ways, to customize and extend the model, and to execute the model on different operating systems. We provide an overview of the EwE source code, its philosophy, and its technical capabilities, targeted to model builders and advanced users of the EwE software. We showcase novel scientific applications of the EwE model that have been facilitated because of the modular approach of the system. We also present three additional versions of EwE that have been written in different computer languages for dedicated purposes. Lastly, we provide an entry point for users for obtaining and using the source code for custom purposes.},
keywords = {Ecopath with Ecosim, ecosystem, fisheries, Food web model, model interoperability, Open source software},
pubstate = {published},
tppubtype = {article}
}
Ecopath with Ecosim (EwE) is a widely applied food web model that is mostly known as desktop software for the Microsoft Windows platform. The freely available Microsoft .NET source code of EwE, however, provides a range of possibilities to use the model in different ways, to customize and extend the model, and to execute the model on different operating systems. We provide an overview of the EwE source code, its philosophy, and its technical capabilities, targeted to model builders and advanced users of the EwE software. We showcase novel scientific applications of the EwE model that have been facilitated because of the modular approach of the system. We also present three additional versions of EwE that have been written in different computer languages for dedicated purposes. Lastly, we provide an entry point for users for obtaining and using the source code for custom purposes.
2015
Journal Articles
17.
Halouani, G.; Gascuel, D.; Hattab, T.; Lasram, F. Ben Rais; Coll, M.; Tsagarakis, K.; Piroddi, C.; Romdhane, M. Salah; Loc’h, F. Le
Fishing impact in Mediterranean ecosystems: an EcoTroph modelling approach Journal Article
In: Journal of Marine Systems, vol. 150, pp. 22–33, 2015.
BibTeX | Tags: EcoTroph, fisheries, local study, Mediterranean Sea
@article{halouani_fishing_2015,
title = {Fishing impact in Mediterranean ecosystems: an EcoTroph modelling approach},
author = {G. Halouani and D. Gascuel and T. Hattab and F. Ben Rais Lasram and M. Coll and K. Tsagarakis and C. Piroddi and M. Salah Romdhane and F. Le Loc’h},
year = {2015},
date = {2015-01-01},
journal = {Journal of Marine Systems},
volume = {150},
pages = {22--33},
keywords = {EcoTroph, fisheries, local study, Mediterranean Sea},
pubstate = {published},
tppubtype = {article}
}
18.
Eddy, T. D.; Coll, M.; Fulton, E. A.; Lotze, H. K.
Trade-Offs between Invertebrate Fisheries Catches and Ecosystem Impacts in Coastal New Zealand Journal Article
In: ICES Journal of Marine Science, vol. 72, no. 5, pp. 1380–1388, 2015.
BibTeX | Tags: fisheries, New Zealand
@article{eddy_trade-offs_2015,
title = {Trade-Offs between Invertebrate Fisheries Catches and Ecosystem Impacts in Coastal New Zealand},
author = {T. D. Eddy and M. Coll and E. A. Fulton and H. K. Lotze},
year = {2015},
date = {2015-01-01},
urldate = {2015-01-01},
journal = {ICES Journal of Marine Science},
volume = {72},
number = {5},
pages = {1380--1388},
keywords = {fisheries, New Zealand},
pubstate = {published},
tppubtype = {article}
}
19.
Christensen, V.; Coll, M.; Buszowski, J.; Cheung, W. W. L.; Frölicher, T.; Steenbeek, J.; Stock, C. A.; Watson, R.; Walters, C. J.
The global ocean is an ecosystem: Simulating marine life and fisheries Journal Article
In: Global Ecology and Biogeography, vol. 24, no. 5, pp. 507–517, 2015.
Links | BibTeX | Tags: climate change impacts, EcoOcean, fisheries, global study
@article{christensen_global_2015b,
title = {The global ocean is an ecosystem: Simulating marine life and fisheries},
author = {V. Christensen and M. Coll and J. Buszowski and W. W. L. Cheung and T. Fr\"{o}licher and J. Steenbeek and C. A. Stock and R. Watson and C. J. Walters},
doi = {10.1111/geb.12281},
year = {2015},
date = {2015-01-01},
urldate = {2015-01-01},
journal = {Global Ecology and Biogeography},
volume = {24},
number = {5},
pages = {507--517},
keywords = {climate change impacts, EcoOcean, fisheries, global study},
pubstate = {published},
tppubtype = {article}
}
2014
Journal Articles
20.
Christensen, V.; Coll, M.; Piroddi, C.; Steenbeek, J.; Buszowski, J.; Daniel, P.
Fish biomass in the world ocean: a century of decline Journal Article
In: Marine Ecology Progress Series, vol. 512, 2014.
Links | BibTeX | Tags: fisheries, global study, model interoperability
@article{christensen_fish_2014,
title = {Fish biomass in the world ocean: a century of decline},
author = {V. Christensen and M. Coll and C. Piroddi and J. Steenbeek and J. Buszowski and P. Daniel},
url = {http://digital.csic.es/handle/10261/46225},
doi = {10.3354/meps10946},
year = {2014},
date = {2014-01-01},
urldate = {2012-06-22},
journal = {Marine Ecology Progress Series},
volume = {512},
keywords = {fisheries, global study, model interoperability},
pubstate = {published},
tppubtype = {article}
}
Contact
Ecopath International Initiative
Barcelona, Spain
PIC 958090341
info@ecopathinternational.org
Ecopath International Initiative is a not-for-profit research organization
Photo credits
© Marta Coll
© Jeroen Steenbeek
© Jeroen Steenbeek