Publications

Ecopath International Initiative has participated in the following publications:

Books

3 results

2018
[3]	EwE model guidelines for MSP game play (Steenbeek, Jeroen), figshare, 2018. [bibtex] [pdf] [doi]
[2]	Integrating Ecopath with Ecosim into the MSP software - conceptual design (Steenbeek, Jeroen), figshare, 2018. [bibtex] [pdf] [doi]
[1]	MSP Challenge 2050 food web review (Steenbeek, Jeroen), figshare, 2018. [bibtex] [pdf] [doi]

Book Chapters

6 results

2016
[6]	Ecological indicators and food-web models as tools to study historical changes in marine ecosystems (Coll, M. and Lotze, H. K.), Chapter in Perspectives on Oceans Past: A Handbook of Marine Environmental History (Kathleen Schwerdtner Máñez, Bo Poulsen, ed.), Springer, 2016. [bibtex]
[5]	Chapter 4. Modelling impacts of drivers on biodiversity and ecosystems (Brotons, L., Christensen, V., Ravindranath, N.H., Cao, M., Chun, J.H., Maury, O., Peri, P.L., Proença, V., Salihoglu, B., Chaturvedi, R. K., Coll, M., Otto, S. P., Rao, A. S. and Titeux, N.), Chapter in Methodological assessment of scenarios and models of biodiversity and ecosystem services. IPBES deliverable 3(c). (S. Ferrier, K. N. Ninan, P. Leadley, R. Alkemade, L. A. Acosta, H.R. Akçakaya, L. Brotons, W.W.L. Cheung, V. Christensen, K. A. Harhash, J. Kabubo-Mariara, C. Lundquist, M. Obersteiner, H. Pereira, G. Peterson, R. Pichs-Madruga, N. Ravindranath, C. Rondinini, Wintle, B. A., eds.), Secretariat of the Intergovernmental Platform for Biodiversity and Ecosystem Services, 2016. [bibtex]
2014
[4]	Comparative ecological analysis of Mediterranean deep-sea ecosystems and simulations of global change (Tecchio, S., Coll, M and Sarda, F.), Chapter in Ecopath 30 Years Conference Proceedings: Extended Abstracts. Fisheries Centre Research Reports 22(3) [ISSN 1198-6727]. 237 p. (Steenbeek, J., Piroddi, C., Coll, M., Heymans, J. J., Villasante, S., Christensen, V., ed.), 2014. [bibtex]
[3]	Ecopath 30 Years Conference Proceedings: Extended Abstracts, Chapter in Ecopath 30 Years Conference Proceedings: Extended Abstracts (Steenbeek, Jeroen, Piroddi, Chiara, Coll, Marta, Heymans, Johanna J., Villasante, Sebastian, Christensen, Villy, eds.), volume 22, 2014. [bibtex]
[2]	Advances of modelling spatial-temporal ecosystem dynamics in the Mediterranean Sea (Piroddi, C, Steenbeek, J, Liquete, C, Coll, M, Macias Moy, D and Giannoulaki, M), Chapter in Ecopath 30 Years Conference Proceedings: Extended Abstracts. Fisheries Centre Research Reports 22(3) [ISSN 1198-6727]. 237 p. (Steenbeek, J., Piroddi, C., Coll, M., Heymans, J. J., Villasante, S., Christensen, V., ed.), 2014. [bibtex]
[1]	Cumulative effects of environmental and human activities in the Southern Catalan Sea ecosystem (NW Mediterranean) associated with the Ebro Delta River (Coll, M, Steenbeek, J, Palomera, I, Sole, J. and Christensen, V.), Chapter in Ecopath 30 Years Conference Proceedings: Extended Abstracts. Fisheries Centre Research Reports 22(3) [ISSN 1198-6727]. 237 p. (Steenbeek, J., Piroddi, C., Coll, M., Heymans, J. J., Villasante, S., Christensen, V., ed.), 2014. [bibtex]

Refereed Articles

45 results

2018
[45]	A protocol for the intercomparison of marine fishery and ecosystem models: Fish-MIP v1.0 (Tittensor, D.P., Eddy, T. D., Lotze, H.K., Galbraith, E.D., Cheung, W., Barange, M, Blanchard, J., Bopp, L., Bryndum-Buchholz, A., Büchner, M., Bulman, C., Carozza, D., Christensen, V., Coll, M., Dunne, J., Fernandes, J.A, Fulton, B., Hobdayn, A., Huber, V., Jennings, S., Jones, M., Lehodey, P., Link, J.S., Mackinson, S., Maury, O., Niiranen, S., Oliveros-Ramos, R., Roy, T., Schewe, J., Shin, Y. J., Silva, T.A.M., Stock, C.A., Steenbeek, J, Underwood, P., Volkholz, J., Watson, J. and Walker, N.), In Geoscientific Model Development, volume 11, 2018. [bibtex]
[44]	A risk-based approach to cumulative effect assessments for marine management (Stelzenmüller, V., Coll, M., Mazaris, A. D., Giakoumi, S., Katsanevakis, S., Portman, M., Degen, R., Mackelworth, P., Gimpel, A., Albano, P. G., Almpanidou, V., Claudet, J., Essel, F., Evagelopoulos, T., Heymans, J. J., Genov, T., Kark, S., Micheli, F., Pennino, M. G., Rilov, G., Rumes, B., Steenbeek, J. and Ojaveer, H.), In Science of the Total Environment, volume 612, 2018. [bibtex]
[43]	The specificity of marine ecological indicators to fishing in the face of environmental change: a multi-model evaluation (Shin, Y. J., Houle, J.E., Akoglu, E., Blanchard, J., Bundy, A., Coll, M., Demarcq, H, Fu, C., Fulton, E.A., Heymans, J.J., Salihoglu, B., Shannon, L.J., Sporcic, M. and Velez, L.), In Ecological Indicators, volume In press, 2018. [bibtex]
[42]	Ecological role and historical trends of large pelagic predators in a subtropical marine ecosystem of the South Atlantic (Bornatowski, H., Angelini, R., Coll, M., Barreto, R. P. and Amorim, A. F.), In Reviews in Fish Biology and Fisheries, volume DOI 10.1007/s11160-017-9492-z, 2018. [bibtex]
[41]	Drought, spread of invaders and biotic homogenization in artificial environments (Bezerra, L.A.V., Angelini, R., Vitule, J.R.S, Sánchez-Botero, J. I. and Coll, M), In Hydrobiologia, volume 10.1007/s10750-017-3432-8, 2018. [bibtex]
[40]	Ecosystem modeling as a framework to convert a multi-disciplinary research approach into a useful food web model (Angelini, R., Contente, R., Rossi-Wongtschowski, C.L.D.B., Soares, L., Schaeffer-Novelli, Y., Lopes, R., Mancini, P, Coll, M. and Amaral, A.), In Ocean & Coastal Management, 2018. [bibtex]
2017
[39]	Assessing the changing biodiversity of exploited marine ecosystems (Shannon, J. L. and Coll, M.), In Current Opinion in Environmental Sustainability, volume 29, 2017. [bibtex]
[38]	Historical changes of the Mediterranean Sea ecosystem: modelling the role and impact of primary productivity and fisheries changes over time (Piroddi, C., Coll, M., Liquete, C., Macias Moy, D, Greer, K., Buszowski, J., Steenbeek, J., Danovaro, R. and Christensen, V.), In Scientific Reports, volume 7, 2017. [bibtex] [pdf]
[37]	Changes in trophic ecology of fish assemblages after no take Marine Protected Area designation in the southwestern coast of Portugal (Pereira, Tadeu José, Manique, Joana, Quintella, Bernardo Ruivo, Castro, Nuno, de Almeida, Pedro Raposo and Costa, José Lino), In Ocean & Coastal Management, volume 137, 2017. [bibtex]
[36]	Advancing marine conservation in European and contiguous seas with the MarCons Action (Katsanevakis, S., Mackelworth, P., Coll, M., Fraschetti, S., Mačić, V., Giakoumi, S., Jones, P.J.S., Levin, N., Albano, P.G., Badalamenti, F., Brennan, R. U., Claudet, J., Culibrk, D., D’Anna, G., Deidun, A., Evagelopoulos, A., García-Charton, J.A., Goldsborough, D., Holcer, D., Jimenez, C., Kark, S., Sørensen, T. K., Lazar, B., Martin, G., Mazaris, A. D., Micheli, F, Milner-Gulland, E.J., Pipitone, C., Portman, M .E., Pranovi, F., Rilov, G., Smith, R. J., Stelzenmüller, V., Vogiatzakis, I. and Winters, G.), In Research Ideas and Outcomes, volume 3, 2017. [bibtex]
[35]	Ecosystem Effects of Invertebrate Fisheries (Eddy, T. D., Lotze, H. K., Fulton, E., Coll, M., Ainsworth, C. H., Neves de Araújo, J., Bulman, C., Bundy, A., Christensen, V., Field, J., Gribble, N, Hasan, M., Mackinson, S. and Townsend, H.), In Fish and Fisheries, volume 18, 2017. [bibtex]
[34]	Modeling the role and impact of alien species and fisheries on the Israeli marine continental shelf ecosystem (Corrales, X., Ofir, E., Coll, M., Menachem, G., Edelist, D., Heymans, J. J. and Gal, G.), In Journal of Marine Systems, volume 170, 2017. [bibtex]
[33]	Hindcasting the dynamics of an Eastern Mediterranean marine ecosystem under the impacts of multiple stressors (Corrales, X., Coll, M., Ofir, E., Piroddi, C., Goren, M., Edelist, D., Heymans, J.J., Steenbeek, J., Christensen, V. and Gal, G.), In Marine Ecolog Progress Series, volume 580, 2017. [bibtex]
[32]	Standardized ecological indicators to assess aquatic food webs: the ECOIND software plug-in for Ecopath with Ecosim models (Coll, M and Steenbeek, J), In Environmental Modelling and Software, volume 89, 2017. [bibtex] [pdf]
2016
[31]	Modelling marine ecosystems using the Ecopath with Ecosim food web approach: New insights to address complex dynamics after 30 years of developments (Villasante, S., Arreguín-Sánchez, F., Heymans, J.J., Libralato, S., Piroddi, C., Christensen, V. and Coll, M.), In Ecological Modelling, volume 331, 2016. [bibtex]
[30]	Ecopath with Ecosim as a model-building toolbox: Source code capabilities, extensions, and variations (Steenbeek, Jeroen, Buszowski, Joe, Christensen, Villy, Akoglu, Ekin, Aydin, Kerim, Ellis, Nick, Felinto, Dalai, Guitton, Jerome, Lucey, Sean, Kearney, Kelly, Mackinson, Steven, Pan, Mike, Platts, Mark and Walters, Carl), In Ecological Modelling, 2016. [bibtex] [pdf] [doi]
[29]	A Stepwise Fitting Procedure for automated fitting of Ecopath with Ecosim models (Scott, Erin, Serpetti, Natalia, Steenbeek, Jeroen and Heymans, Johanna Jacomina), In SoftwareX, volume 5, 2016. [bibtex] [pdf] [doi]
[28]	Ecosystem indicators – accounting for variability in species’ trophic levels (Reed, J., Shannon, L. J., Velez, L., Akoglu, E., Bundy, A., Coll, M., Fu, C., Fulton, B., Gruss, A., Halouani, G., Heymans, J.J., Houle, J.E., Le Loc'h, F., Salihoglu, B., Verley, P. and Shin, Y.J.), In ICES Journal of Marine Science, 2016. [bibtex]
[27]	Employing ecosystem models and geographic information systems (GIS) to investigate the response of changing marsh edge on historical biomass of estuarine nekton in Barataria Bay, Louisiana, USA (Lewis, K. A., de Mutsert, K., Steenbeek, J., Peele, H., Cowan, J. H. and Buszowski, J.), In Ecological Modelling, volume 331, 2016. [bibtex] [pdf]
[26]	Best practice in Ecopath with Ecosim food-web models for ecosystem-based management (Heymans, J. J., Coll, M., Link, J.S., Mackinson, S., Steenbeek, J and Christensen, V.), In Ecological Modelling, volume 331, 2016. [bibtex]
[25]	Best practice in developing, balancing, fitting and using Ecopath with Ecosim food-web models for ecosystem-based management (Heymans, J. J., Coll, M., Link, J.S., Mackinson, S., Steenbeek, J and Christensen, V.), In Ecological Modelling, volume 331, 2016. [bibtex] [doi]
[24]	Exploring effects of hypoxia on fish and fisheries in the northern Gulf of Mexico using a dynamic spatially explicit ecosystem model (de Mutsert, Kim, Steenbeek, Jeroen, Lewis, Kristy, Buszowski, Joe, Cowan Jr., James H. and Christensen, Villy), In Ecological Modelling, volume 331, 2016. [bibtex] [pdf] [doi]
[23]	Modelling the cumulative spatial-temporal effects of environmental factors and fishing in a NW Mediterranean marine ecosystem (Coll, M., Steenbeek, J., Sole, J., Palomera, I. and Christensen, V.), In Ecological Modelling, volume 331, 2016. [bibtex]
2015
[22]	Keystone species: towards an operational concept for marine biodiversity conservation (Valls, A., Coll, M. and Christensen, V.), In Ecological Monographs, volume 85, 2015. [bibtex] [pdf]
[21]	Structure, functioning, and cumulative stressors of Mediterranean deep-sea ecosystems (Tecchio, S., Coll, M. and Sarda, F.), In Progress in Oceanography, volume 135, 2015. [bibtex]
[20]	Modelling the Mediterranean marine ecosystem as a whole: addressing the challenge of complexity (Piroddi, Chiara, Coll, Marta, Steenbeek, Jeroen, Moy, Diego Macias and Christensen, Villy), In , 2015. [bibtex] [pdf]
[19]	Emergent properties delineate marine ecosystem perturbation and recovery (Link, J.S., Pranovi, F., Libralato, S., Coll, M., Christensen, V., Solidoro, C. and Fulton, E.), In Trends in Ecology & Evolution, volume In press, 2015. [bibtex]
[18]	Fishing impact in Mediterranean ecosystems: an EcoTroph modelling approach (Halouani, G., Gascuel, D., Hattab, T., Ben Rais Lasram, F., Coll, M., Tsagarakis, K., Piroddi, C., Salah Romdhane, M and Le Loc’h, F.), In Journal of Marine Systems, volume 150, 2015. [bibtex]
[17]	Trade-Offs between Invertebrate Fisheries Catches and Ecosystem Impacts in Coastal New Zealand (Eddy, T. D., Coll, M., Fulton, F.A. and Lotze, H. K.), In ICES Journal of Marine Science, volume 72, 2015. [bibtex]
[16]	Ecosystem structure and fishing impacts in the North-western Mediterranean Sea using a food-web model within a comparative approach (Corrales, X., Coll, M., Tecchio, S., Bellido, J. M., Fernández, A. M and Palomera, I), In Journal of Marine Systems, volume 148, 2015. [bibtex]
[15]	Modelling dynamic ecosystems: venturing beyond boundaries with the Ecopath approach (Coll, M., Akoglu, E., Arreguín-Sánchez, F., Fulton, E. A., Gascuel, D., Heymans, J. J., Libralato, S., Mackinson, S., Palomera, I. and Piroddi, C.), In Reviews in Fish Biology and Fisheries, volume 25, 2015. [bibtex] [pdf]
[14]	“Low hanging fruits” for conservation of marine vertebrate species at risk in the Mediterranean Sea (Coll, M., Steenbeek, J., Lasram, F. Ben Rais, Mouillot, D. and Cury, P.), In Global Ecology and Biogeography, volume 24, 2015. [bibtex]
[13]	The global ocean is an ecosystem: Simulating marine life and fisheries (Christensen, V., Coll, M., Buszowski, J., Cheung, W. W. L., Frölicher, T., Steenbeek, J., Stock, C.A., Watson, R. and Walters, C.J.), In Global Ecology and Biogeography, volume 24, 2015. [bibtex] [pdf] [doi]
2014
[12]	Representing Variable Habitat Quality in a Spatial Food Web Model (Christensen, Villy, Coll, Marta, Steenbeek, Jeroen, Buszowski, Joe, Chagaris, Dave and Walters, Carl J.), In Ecosystems, 2014. [bibtex] [pdf] [doi]
[11]	Invading the Mediterranean Sea: biodiversity patterns shaped by human activities (Stelios Katsanevakis, Marta Coll), In , 2014. [bibtex] [pdf] [doi]
[10]	Invading the Mediterranean Sea: biodiversity patterns shaped by human activities (Katsanevakis, S., Coll, M., Piroddi, C., Steenbeek, J., Lasram, F. Ben Rais, Zenetos, A. and Cardoso, A. C.), In Frontiers in Marine Science - Marine Ecosystem Ecology, volume doi: 10.3389/fmars.2014.00032, 2014. [bibtex]
[9]	Global Patterns in Ecological Indicators of Marine Food Webs: A Modelling Approach (Heymans, J. J., Coll, M., Libralato, S., Morissette, L. and Christensen, V.), In PLoS ONE, volume 9, 2014. [bibtex]
[8]	Predicting species distribution: complementarity of food webs and hierarchical Bayesian spatial modelling (Grazia-Pennino, M., Coll, M., Kaplan, D., Palomera, I., Steenbeek, J., Bellido, J.M. and Esteban, A.), In 4th International Statistical Ecology Conference. Montpellier, France, 2014. [bibtex]
[7]	Fish biomass in the world ocean: a century of decline (Christensen, V., Coll, M., Piroddi, C., Steenbeek, J., Buszowski, J. and Daniel, P.), In Marine Ecology Progress Series, volume 512, 2014. [bibtex] [pdf]
2013
[6]	Food-web structure of and fishing impacts on the Gulf of Cadiz ecosystem (South-western Spain) (Torres, M.A., Coll, M., Heymans, J. J., Christensen, V. and Sobrino, I.), In Ecological Modelling, volume 265, 2013. [bibtex]
[5]	Food web structure and vulnerability of a deep ecosystem in the NW Mediterranean Sea (Tecchio, S., Coll, M., Christensen, V., Company, J. B., Ramirez-Llodra, E. and Sarda, F.), In Deep Sea Research II: Topical Studies in Oceanography, volume 75, 2013. [bibtex]
[4]	Ecological role of the endemic Starry ray Raja asterias in the NW Mediterranean Sea and management options for its conservation (Coll, M., Navarro, J and Palomera, I), In Biological Conservation, volume 157, 2013. [bibtex]
[3]	Assessing the trophic position and ecological role of squids in marine ecosystems by means of food-web models (Coll, M., Navarro, J., Olson, R. and Christensen, V.), In Deep Sea Research II: Topical Studies in Oceanography, volume 95, 2013. [bibtex]
2012
[2]	Fishing management scenarios to rebuild exploited resources and ecosystems of the Northern-Central Adriatic (Mediterranean Sea) (Fouzai, N., Coll, M., Palomera, I., Santojanni, A., Arneri, E. and Christensen, V.), In Journal of Marine Systems, volume 102-104, 2012. [bibtex] [pdf] [doi]
[1]	Ecosystem effects of Bluefin Tuna (Thunnus thynnus thynnus) aquaculture in the North-Western Mediterranean Sea (Forestal, F., Coll, M., Christensen, V. and Die, D.), In Marine Ecology Progress Series, volume 456, 2012. [bibtex]

Other Publications

1 result

2014
[1]	New software plug-in to calculate biodiversity and conservation-based indicators from EwE food web models (Coll, M. and Steenbeek, J), Technical report, , 2014. [bibtex]

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